Variant report

Variant	rs11929607
Chromosome Location	chr3:89933816-89933817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1106306	1.00[EUR][1000 genomes]
rs11915250	0.83[AMR][1000 genomes]
rs11915838	0.83[AMR][1000 genomes]
rs11916776	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921897	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11925483	0.83[AMR][1000 genomes]
rs11926396	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926549	0.83[AMR][1000 genomes]
rs11927661	0.83[AMR][1000 genomes]
rs11928041	0.83[AMR][1000 genomes]
rs11928160	0.83[AMR][1000 genomes]
rs11928161	0.83[AMR][1000 genomes]
rs11928197	0.83[AMR][1000 genomes]
rs11929614	0.83[AMR][1000 genomes]
rs11929622	0.83[AMR][1000 genomes]
rs11929639	0.83[AMR][1000 genomes]
rs13340177	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1357167	1.00[EUR][1000 genomes]
rs1520591	0.83[AMR][1000 genomes]
rs1915734	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1915735	0.83[AMR][1000 genomes]
rs2347535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34684257	0.83[AMR][1000 genomes]
rs55640804	1.00[EUR][1000 genomes]
rs55743058	0.83[AMR][1000 genomes]
rs55744636	0.83[AMR][1000 genomes]
rs55746393	0.83[AMR][1000 genomes]
rs55900084	0.83[AMR][1000 genomes]
rs55915716	1.00[EUR][1000 genomes]
rs55996782	0.83[AMR][1000 genomes]
rs56062637	0.83[AMR][1000 genomes]
rs56089352	0.83[AMR][1000 genomes]
rs56108378	0.83[AMR][1000 genomes]
rs56158147	0.83[AMR][1000 genomes]
rs56763170	0.83[AMR][1000 genomes]
rs57057195	0.83[AMR][1000 genomes]
rs57243284	0.83[AMR][1000 genomes]
rs57601270	0.83[AMR][1000 genomes]
rs57803709	0.83[AMR][1000 genomes]
rs58239809	0.83[AMR][1000 genomes]
rs58793033	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59015121	0.83[AMR][1000 genomes]
rs59235374	0.83[AMR][1000 genomes]
rs59399871	0.83[AMR][1000 genomes]
rs59478765	0.83[AMR][1000 genomes]
rs60329202	0.83[AMR][1000 genomes]
rs60507817	0.83[AMR][1000 genomes]
rs60621365	0.83[AMR][1000 genomes]
rs61162431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61257843	0.83[AMR][1000 genomes]
rs61374484	0.83[AMR][1000 genomes]
rs61642402	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6774114	0.83[AMR][1000 genomes]
rs6774549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777959	0.83[AMR][1000 genomes]
rs6789989	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798157	0.83[AMR][1000 genomes]
rs72912052	0.83[AMR][1000 genomes]
rs72912054	0.83[AMR][1000 genomes]
rs72912058	0.83[AMR][1000 genomes]
rs72912060	0.83[AMR][1000 genomes]
rs72912073	0.83[AMR][1000 genomes]
rs72912077	0.83[AMR][1000 genomes]
rs72912082	0.83[AMR][1000 genomes]
rs72912089	0.83[AMR][1000 genomes]
rs72914023	0.83[AMR][1000 genomes]
rs72914055	0.83[AMR][1000 genomes]
rs72914062	0.83[AMR][1000 genomes]
rs72915828	0.83[AMR][1000 genomes]
rs72915840	0.83[AMR][1000 genomes]
rs72915842	0.83[AMR][1000 genomes]
rs72915843	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915844	0.83[AMR][1000 genomes]
rs72915886	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917604	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917605	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917629	0.85[AMR][1000 genomes]
rs72917631	0.83[AMR][1000 genomes]
rs72917640	0.83[AMR][1000 genomes]
rs72917652	0.83[AMR][1000 genomes]
rs72917670	1.00[EUR][1000 genomes]
rs72919708	1.00[EUR][1000 genomes]
rs72929635	0.83[AMR][1000 genomes]
rs72929637	0.83[AMR][1000 genomes]
rs72929656	0.83[AMR][1000 genomes]
rs72929658	0.83[AMR][1000 genomes]
rs72929660	0.83[AMR][1000 genomes]
rs73846232	0.83[AMR][1000 genomes]
rs73846237	0.83[AMR][1000 genomes]
rs73846238	0.83[AMR][1000 genomes]
rs73847937	0.83[AMR][1000 genomes]
rs7610460	0.83[AMR][1000 genomes]
rs7628770	0.83[AMR][1000 genomes]
rs7630224	0.83[AMR][1000 genomes]
rs7645707	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7653528	0.83[AMR][1000 genomes]
rs884190	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9682231	0.83[AMR][1000 genomes]
rs9682398	0.83[AMR][1000 genomes]
rs9683254	0.83[AMR][1000 genomes]
rs9714298	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv869889	chr3:89653238-90087372	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1005444	chr3:89803641-90030755	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1008130	chr3:89837442-90192503	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1010796	chr3:89870548-90192503	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1013598	chr3:89879377-90192503	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536642	chr3:89879377-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1007198	chr3:89897811-90027456	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv999312	chr3:89897811-90030878	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv590966	chr3:89904882-90199759	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89933800-89935600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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