Variant report
| Variant | rs11929774 |
|---|---|
| Chromosome Location | chr4:90969583-90969584 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11097241 | 0.84[EUR][1000 genomes] |
| rs12648916 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13104173 | 0.98[EUR][1000 genomes] |
| rs13113259 | 0.88[EUR][1000 genomes] |
| rs13117400 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13122257 | 0.96[EUR][1000 genomes] |
| rs13122493 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1443797 | 0.98[EUR][1000 genomes] |
| rs1838220 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1975488 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2120373 | 0.85[EUR][1000 genomes] |
| rs4561894 | 0.94[EUR][1000 genomes] |
| rs4626162 | 0.94[EUR][1000 genomes] |
| rs56300941 | 0.96[EUR][1000 genomes] |
| rs6532211 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6812321 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6815240 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6830566 | 0.95[EUR][1000 genomes] |
| rs6839192 | 0.83[EUR][1000 genomes] |
| rs6842029 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs722937 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs724455 | 0.94[EUR][1000 genomes] |
| rs7655785 | 0.83[EUR][1000 genomes] |
| rs7662081 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7670600 | 0.95[EUR][1000 genomes] |
| rs7671006 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7675130 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs894803 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012406 | chr4:90167781-91166787 | Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv949454 | chr4:90272120-91156917 | Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv470053 | chr4:90879613-91439573 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv879537 | chr4:90883047-91165346 | Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:90964000-90973400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr4:90966200-90973400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
