Variant report

Variant	rs11929783
Chromosome Location	chr4:87367330-87367331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11941484	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35455450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6824346	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831576	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7674832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690940	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87342000-87372800	Weak transcription	Aorta	Aorta
2	chr4:87354200-87369000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:87354600-87374000	Weak transcription	Pancreas	Pancrea
4	chr4:87363000-87370800	Weak transcription	Fetal Kidney	kidney
5	chr4:87363400-87370800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:87363600-87367400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:87364600-87367400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:87364800-87369800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:87364800-87370000	Weak transcription	Ovary	ovary
10	chr4:87364800-87370200	Weak transcription	Right Atrium	heart
11	chr4:87365000-87370000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:87365000-87370600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:87365000-87372600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:87365400-87370000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:87365600-87371800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:87366400-87368400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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