Variant report

Variant	rs11930170
Chromosome Location	chr4:106910269-106910270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11726479	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11730681	0.94[ASN][1000 genomes]
rs11734648	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036483	0.94[ASN][1000 genomes]
rs60048583	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834206	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs994370	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106909600-106911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:106909800-106913000	Enhancers	Aorta	Aorta
4	chr4:106909800-106913200	Enhancers	HUVEC	blood vessel
5	chr4:106910000-106910800	Weak transcription	Psoas Muscle	Psoas
6	chr4:106910000-106913200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr4:106910000-106913400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr4:106910200-106910400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:106910200-106911400	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links