Variant report

Variant	rs11931079
Chromosome Location	chr4:119041471-119041472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10017003	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101451	1.00[ASN][1000 genomes]
rs13103629	1.00[ASN][1000 genomes]
rs13104251	1.00[ASN][1000 genomes]
rs13109564	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119795	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120016	1.00[ASN][1000 genomes]
rs13123277	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125461	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127368	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128545	1.00[ASN][1000 genomes]
rs13130953	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131623	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132957	1.00[ASN][1000 genomes]
rs13135360	1.00[ASN][1000 genomes]
rs13136897	1.00[ASN][1000 genomes]
rs13138385	1.00[ASN][1000 genomes]
rs13138982	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140433	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141841	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142184	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144171	1.00[ASN][1000 genomes]
rs13144419	1.00[ASN][1000 genomes]
rs13146959	1.00[ASN][1000 genomes]
rs13151098	1.00[ASN][1000 genomes]
rs1608506	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17516164	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17516219	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17516233	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17516389	1.00[ASN][1000 genomes]
rs17516512	1.00[ASN][1000 genomes]
rs17516526	1.00[ASN][1000 genomes]
rs17593793	0.81[EUR][1000 genomes]
rs17593877	0.81[EUR][1000 genomes]
rs17594018	1.00[ASN][1000 genomes]
rs17594257	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17594447	1.00[ASN][1000 genomes]
rs17594468	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17594559	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17594740	1.00[ASN][1000 genomes]
rs17594782	1.00[ASN][1000 genomes]
rs17626479	1.00[ASN][1000 genomes]
rs28634983	0.81[EUR][1000 genomes]
rs34082100	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34101813	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34185290	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34202571	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284204	1.00[ASN][1000 genomes]
rs34302716	1.00[ASN][1000 genomes]
rs34531766	1.00[ASN][1000 genomes]
rs34723948	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804902	1.00[ASN][1000 genomes]
rs34835262	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34928611	1.00[ASN][1000 genomes]
rs34958556	1.00[ASN][1000 genomes]
rs35054481	1.00[ASN][1000 genomes]
rs35215908	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35420005	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35553303	1.00[ASN][1000 genomes]
rs35612621	1.00[ASN][1000 genomes]
rs35650624	1.00[ASN][1000 genomes]
rs35749089	1.00[ASN][1000 genomes]
rs35774897	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35861609	1.00[ASN][1000 genomes]
rs35872631	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35875491	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35876590	1.00[ASN][1000 genomes]
rs35909687	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35983699	1.00[ASN][1000 genomes]
rs36058627	1.00[ASN][1000 genomes]
rs55699931	1.00[ASN][1000 genomes]
rs71608346	1.00[ASN][1000 genomes]
rs71608350	1.00[ASN][1000 genomes]
rs71608351	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71608352	1.00[ASN][1000 genomes]
rs71608355	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71608356	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71608358	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71608359	1.00[ASN][1000 genomes]
rs71608361	1.00[ASN][1000 genomes]
rs71608363	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119040600-119047000	Strong transcription	Dnd41	blood
2	chr4:119041400-119041600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:119041400-119041800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:119041400-119041800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:119041400-119042000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:119041400-119042000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:119041400-119042000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:119041400-119042200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:119041400-119042200	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links