Variant report

Variant	rs11931833
Chromosome Location	chr4:128858901-128858902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128858487..128860544-chr4:128863369..128865337,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11932251	1.00[AMR][1000 genomes]
rs11932481	0.80[YRI][hapmap]
rs11933103	1.00[AMR][1000 genomes]
rs11934357	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935267	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938181	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940703	0.80[YRI][hapmap]
rs11941287	0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941857	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11942042	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943141	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947194	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947313	0.80[YRI][hapmap]
rs17012665	0.88[AFR][1000 genomes]
rs17012675	0.88[AFR][1000 genomes]
rs17012679	0.82[AFR][1000 genomes]
rs17012845	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17012942	0.80[YRI][hapmap]
rs6534652	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv817326	chr4:128292216-128915201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv879922	chr4:128554404-128901402	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1801492	chr4:128566686-128934513	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
8	esv1793579	chr4:128577439-128871309	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv3431515	chr4:128657260-128932577	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	nsv1019193	chr4:128810527-128949320	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
16	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
17	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
18	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
19	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128818800-128863000	Weak transcription	A549	lung
2	chr4:128831200-128884600	Weak transcription	Spleen	Spleen
3	chr4:128832600-128885200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:128833600-128867600	Weak transcription	NHLF	lung
5	chr4:128835000-128885200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:128836000-128864000	Weak transcription	Small Intestine	intestine
7	chr4:128836400-128863000	Weak transcription	Fetal Kidney	kidney
8	chr4:128836800-128884600	Weak transcription	Esophagus	oesophagus
9	chr4:128836800-128885200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:128837000-128868600	Weak transcription	Pancreas	Pancrea
11	chr4:128837000-128885800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:128837400-128885800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:128837600-128861800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:128837800-128885200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:128838000-128865400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:128838000-128866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:128838400-128885200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:128838400-128885800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:128838800-128862600	Weak transcription	HSMMtube	muscle
20	chr4:128838800-128885200	Weak transcription	Right Ventricle	heart
21	chr4:128839800-128861800	Weak transcription	HMEC	breast
22	chr4:128840000-128885800	Weak transcription	Aorta	Aorta
23	chr4:128840600-128885200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:128840800-128885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:128841600-128885200	Weak transcription	Hela-S3	cervix
26	chr4:128841800-128885200	Weak transcription	Gastric	stomach
27	chr4:128842000-128862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:128842000-128862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:128842400-128863000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:128842400-128881200	Weak transcription	Colonic Mucosa	Colon
31	chr4:128842600-128879200	Weak transcription	K562	blood
32	chr4:128842800-128862200	Weak transcription	Fetal Brain Female	brain
33	chr4:128842800-128885400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:128842800-128885600	Weak transcription	Psoas Muscle	Psoas
35	chr4:128843000-128860400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:128843000-128863200	Weak transcription	GM12878-XiMat	blood
37	chr4:128843000-128875800	Weak transcription	HSMM	muscle
38	chr4:128843000-128885200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:128843000-128885200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:128843000-128885200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:128843000-128885800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:128843000-128885800	Weak transcription	Brain Substantia Nigra	brain
43	chr4:128843400-128860400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr4:128843400-128862000	Weak transcription	Dnd41	blood
45	chr4:128843600-128859800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:128843600-128860400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr4:128843800-128860400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr4:128845400-128861800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:128847600-128862800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr4:128847600-128863200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links