Variant report

Variant	rs11931872
Chromosome Location	chr4:31150750-31150751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10517226	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884400	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884408	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884422	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57100354	0.94[EUR][1000 genomes]
rs66518510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66987850	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73218841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73218844	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31143000-31151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:31145600-31154400	Weak transcription	Fetal Heart	heart
3	chr4:31148600-31150800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:31149200-31151800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:31149400-31151400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:31149600-31151600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:31150000-31151600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:31150200-31151200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:31150400-31151000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:31150400-31151200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:31150400-31151200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:31150400-31151200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:31150400-31151200	Enhancers	Fetal Lung	lung
14	chr4:31150400-31151400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:31150600-31150800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr4:31150600-31150800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:31150600-31151000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr4:31150600-31151200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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