Variant report

Variant	rs11932335
Chromosome Location	chr4:82390333-82390334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17005143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17005146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17005147	1.00[EUR][1000 genomes]
rs17005150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82354200-82390800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:82363600-82390400	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:82363600-82391000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:82368200-82391400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:82369600-82391000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:82377800-82390800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:82377800-82391000	Weak transcription	Dnd41	blood
8	chr4:82378600-82390800	Weak transcription	Fetal Stomach	stomach
9	chr4:82379000-82391400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:82380600-82391000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:82380600-82391200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:82380600-82391200	Weak transcription	Placenta	Placenta
13	chr4:82381600-82390400	Weak transcription	Fetal Thymus	thymus
14	chr4:82381800-82390400	Weak transcription	Esophagus	oesophagus
15	chr4:82382000-82390400	Weak transcription	Lung	lung
16	chr4:82383200-82390400	Weak transcription	Gastric	stomach
17	chr4:82383200-82391000	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:82387000-82391000	Weak transcription	Colonic Mucosa	Colon
19	chr4:82387000-82391400	Weak transcription	Psoas Muscle	Psoas
20	chr4:82387400-82391000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:82387600-82390400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:82387600-82391000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:82388200-82390800	Enhancers	Primary T cells from cord blood	blood
24	chr4:82388400-82391000	Enhancers	Primary B cells from peripheral blood	blood
25	chr4:82388400-82391000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:82388600-82391400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:82388800-82391200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr4:82388800-82391600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:82389000-82390400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:82389000-82390800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:82389000-82390800	Weak transcription	Fetal Lung	lung
32	chr4:82389400-82391000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:82389600-82390800	Enhancers	Primary hematopoietic stem cells	blood
34	chr4:82389600-82390800	Enhancers	Fetal Intestine Small	intestine
35	chr4:82389600-82390800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr4:82389600-82391000	Enhancers	Brain Substantia Nigra	brain
37	chr4:82389800-82390600	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr4:82389800-82390600	Flanking Active TSS	Liver	Liver
39	chr4:82389800-82390600	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr4:82389800-82390800	Active TSS	Fetal Brain Male	brain
41	chr4:82389800-82390800	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr4:82389800-82391000	Enhancers	Fetal Intestine Large	intestine
43	chr4:82389800-82391400	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr4:82389800-82391400	Active TSS	Fetal Brain Female	brain
45	chr4:82389800-82391400	Enhancers	Small Intestine	intestine
46	chr4:82389800-82391400	Enhancers	NHEK	skin
47	chr4:82389800-82393800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:82390000-82390400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
49	chr4:82390000-82390400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr4:82390000-82390400	Active TSS	Thymus	Thymus

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