Variant report

Variant	rs11934364
Chromosome Location	chr4:6915342-6915343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6914259..6917373-chr4:7000234..7002877,3	K562	blood:
2	chr4:6913495..6915954-chr4:7072774..7077001,4	K562	blood:
3	chr4:6782842..6784366-chr4:6913966..6916022,2	K562	blood:
4	chr4:6913191..6915795-chr4:7078179..7080904,2	K562	blood:
5	chr4:6913588..6915420-chr4:7049904..7051749,2	K562	blood:
6	chr4:6782866..6788328-chr4:6910576..6915466,10	K562	blood:
7	chr4:6726504..6730102-chr4:6912147..6916497,3	K562	blood:
8	chr4:6913783..6916218-chr4:7103746..7106365,2	K562	blood:
9	chr4:6907895..6910630-chr4:6913447..6916196,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245468	Chromatin interaction
ENSG00000132405	Chromatin interaction
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12510715	1.00[CHB][hapmap]
rs2301818	1.00[CHB][hapmap]
rs2301819	1.00[CHB][hapmap]
rs4428285	1.00[CHB][hapmap]
rs4689059	1.00[CHB][hapmap]
rs8180337	1.00[CHB][hapmap]
rs9291126	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4216	chr4:6876592-6915629	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6912600-6915400	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:6912600-6915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:6912600-6917200	Weak transcription	Small Intestine	intestine
4	chr4:6912600-6918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:6912600-6918000	Weak transcription	HUVEC	blood vessel
6	chr4:6912600-6920000	Weak transcription	HSMM	muscle
7	chr4:6912600-6925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:6912800-6918000	Weak transcription	HMEC	breast
9	chr4:6912800-6918200	Weak transcription	NH-A	brain
10	chr4:6912800-6918200	Weak transcription	NHEK	skin
11	chr4:6913000-6915400	Enhancers	Thymus	Thymus
12	chr4:6913000-6918200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:6913000-6918200	Weak transcription	Fetal Heart	heart
14	chr4:6913000-6918200	Weak transcription	A549	lung
15	chr4:6913000-6918400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:6913000-6918400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr4:6913000-6918400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:6913000-6918400	Weak transcription	Ovary	ovary
19	chr4:6913000-6918400	Weak transcription	HSMMtube	muscle
20	chr4:6913200-6916800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:6913200-6917000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:6913200-6917200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:6913200-6917800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:6913200-6918200	Weak transcription	Fetal Brain Female	brain
25	chr4:6913200-6919000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:6913200-6922600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr4:6913200-6925200	Weak transcription	NHLF	lung
28	chr4:6913400-6915600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:6913400-6915800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:6913400-6916000	Enhancers	Fetal Thymus	thymus
31	chr4:6913400-6916200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:6913400-6917000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:6913400-6917200	Weak transcription	Fetal Stomach	stomach
34	chr4:6913400-6917200	Weak transcription	Stomach Mucosa	stomach
35	chr4:6913400-6918000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:6913400-6918000	Weak transcription	GM12878-XiMat	blood
37	chr4:6913400-6918200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:6913400-6918200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr4:6913400-6918200	Weak transcription	Fetal Brain Male	brain
40	chr4:6913400-6918400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:6913400-6918400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:6913400-6918400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr4:6913600-6916200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:6913600-6916800	Weak transcription	Lung	lung
45	chr4:6913600-6917000	Weak transcription	Colonic Mucosa	Colon
46	chr4:6913600-6917200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:6913600-6917200	Weak transcription	Esophagus	oesophagus
48	chr4:6913600-6917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:6913600-6918000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr4:6913600-6918000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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