Variant report

Variant	rs11935492
Chromosome Location	chr4:2885172-2885173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:2885051-2885203	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:2883697..2886623-chr4:2900900..2904831,4	MCF-7	breast:
2	chr4:2884994..2887786-chr4:2890994..2893239,2	K562	blood:
3	chr4:2884547..2887478-chr4:2888331..2890735,4	K562	blood:
4	chr4:2844429..2847138-chr4:2885010..2887746,2	MCF-7	breast:

Variant related genes	Relation type
ADD1	TF binding region
ENSG00000087274	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10014333	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2870200-2914000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2870600-2886000	Weak transcription	Fetal Brain Male	brain
3	chr4:2871000-2885800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:2871200-2886000	Weak transcription	Aorta	Aorta
5	chr4:2871200-2896000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:2871200-2900600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:2872200-2890800	Weak transcription	A549	lung
8	chr4:2874000-2887000	Weak transcription	Fetal Heart	heart
9	chr4:2874200-2900000	Weak transcription	Hela-S3	cervix
10	chr4:2875400-2886000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:2876000-2885800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:2876000-2886000	Weak transcription	Colonic Mucosa	Colon
13	chr4:2876000-2886600	Weak transcription	Stomach Mucosa	stomach
14	chr4:2876400-2891600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:2876600-2889600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:2876600-2919200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr4:2876800-2889000	Strong transcription	GM12878-XiMat	blood
18	chr4:2876800-2889400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr4:2876800-2891800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:2877000-2886000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:2877000-2889800	Strong transcription	Dnd41	blood
22	chr4:2877200-2886200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:2877200-2891800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:2877200-2919400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:2877400-2886200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:2877400-2889600	Strong transcription	Liver	Liver
27	chr4:2877400-2889600	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr4:2877400-2890000	Strong transcription	Fetal Thymus	thymus
29	chr4:2877400-2890200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:2877400-2891800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr4:2877600-2889600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:2877600-2891400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:2877600-2891600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr4:2877800-2887000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:2877800-2890800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:2877800-2891600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:2878000-2886200	Weak transcription	NHEK	skin
38	chr4:2878000-2891200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr4:2879000-2889800	Strong transcription	Primary B cells from cord blood	blood
40	chr4:2879400-2886000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:2879400-2886000	Weak transcription	HMEC	breast
42	chr4:2880000-2886000	Weak transcription	Brain Substantia Nigra	brain
43	chr4:2880000-2887000	Weak transcription	Psoas Muscle	Psoas
44	chr4:2880200-2887800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:2880200-2889600	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr4:2880400-2886000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr4:2880600-2889600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:2880600-2915000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:2880800-2886000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:2880800-2886600	Weak transcription	Pancreas	Pancrea

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