Variant report

Variant	rs11935951
Chromosome Location	chr4:69917321-69917322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12233719	0.91[CHB][hapmap]
rs13102340	0.86[ASN][1000 genomes]
rs13109724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13146930	1.00[ASN][1000 genomes]
rs1813561	0.92[ASN][1000 genomes]
rs28365063	0.87[EUR][1000 genomes]
rs34528257	0.92[ASN][1000 genomes]
rs4235115	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4262046	1.00[ASN][1000 genomes]
rs4296738	0.83[CHB][hapmap];0.95[ASN][1000 genomes]
rs4314347	0.83[EUR][1000 genomes]
rs4348158	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4403111	0.99[ASN][1000 genomes]
rs4505892	1.00[ASN][1000 genomes]
rs4618379	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4694628	0.83[EUR][1000 genomes]
rs6600892	0.81[EUR][1000 genomes]
rs6822259	0.90[CHB][hapmap]
rs6822302	0.91[CHB][hapmap]
rs7441402	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7686056	0.81[EUR][1000 genomes]
rs7686971	0.92[EUR][1000 genomes]
rs9999287	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69908000-69920200	Weak transcription	Pancreas	Pancrea
2	chr4:69913400-69920200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:69915800-69918200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:69916200-69918200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:69916200-69921200	Active TSS	HepG2	liver
6	chr4:69916800-69917600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:69916800-69920400	Active TSS	Fetal Kidney	kidney
8	chr4:69917000-69917400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:69917000-69917400	Enhancers	Fetal Muscle Leg	muscle
10	chr4:69917000-69917400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:69917000-69917600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:69917000-69917600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:69917000-69917600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:69917000-69917600	Enhancers	Esophagus	oesophagus
15	chr4:69917000-69917600	Enhancers	GM12878-XiMat	blood
16	chr4:69917000-69917800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:69917000-69918000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:69917200-69917400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:69917200-69917400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:69917200-69917400	Flanking Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links