Variant report

Variant	rs11936380
Chromosome Location	chr4:166439392-166439393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73861019	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166435200-166440800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:166437800-166440000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:166438200-166440800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:166438600-166440000	Weak transcription	Adipose Nuclei	Adipose
5	chr4:166438800-166439400	Enhancers	Esophagus	oesophagus
6	chr4:166438800-166439800	Weak transcription	NHEK	skin
7	chr4:166438800-166440600	Enhancers	Liver	Liver
8	chr4:166438800-166462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:166439000-166439800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:166439200-166439600	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links