Variant report

Variant	rs11936525
Chromosome Location	chr4:95220369-95220370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11723410	1.00[MEX][hapmap]
rs2632398	1.00[CEU][hapmap]
rs3103117	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
2	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:95205400-95225000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:95208200-95227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:95208800-95227200	Weak transcription	Left Ventricle	heart
6	chr4:95210000-95228600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:95212800-95228800	Weak transcription	A549	lung
8	chr4:95214200-95226600	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:95214200-95226800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:95214200-95226800	Weak transcription	Osteobl	bone
11	chr4:95214200-95227600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:95214400-95220600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:95214400-95223200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:95214400-95223600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:95214400-95224800	Weak transcription	HSMM	muscle
16	chr4:95214400-95226400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:95214400-95226400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:95214400-95226800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:95214400-95227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:95214400-95227600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:95217200-95227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:95219800-95220600	Strong transcription	Primary hematopoietic stem cells	blood
23	chr4:95219800-95220800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:95219800-95220800	Enhancers	Liver	Liver
25	chr4:95219800-95220800	Enhancers	Fetal Intestine Large	intestine
26	chr4:95219800-95220800	Enhancers	NHEK	skin
27	chr4:95220000-95220400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:95220000-95220600	Enhancers	HMEC	breast
29	chr4:95220000-95220800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:95220000-95220800	Enhancers	Fetal Intestine Small	intestine
31	chr4:95220000-95220800	Enhancers	K562	blood
32	chr4:95220200-95220600	Flanking Active TSS	HepG2	liver
33	chr4:95220200-95220800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr4:95220200-95220800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links