Variant report
| Variant | rs11936993 |
|---|---|
| Chromosome Location | chr4:62512304-62512305 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10020698 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11131340 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11931258 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12233820 | 0.80[ASN][1000 genomes] |
| rs12233859 | 0.80[ASN][1000 genomes] |
| rs12642037 | 0.92[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13115278 | 0.80[ASN][1000 genomes] |
| rs13142656 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1391320 | 0.80[ASN][1000 genomes] |
| rs1497897 | 0.80[ASN][1000 genomes] |
| rs1497899 | 0.80[ASN][1000 genomes] |
| rs1542834 | 0.80[ASN][1000 genomes] |
| rs1587294 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2036199 | 0.94[ASN][1000 genomes] |
| rs2088461 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2088462 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2343526 | 0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4860422 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4860424 | 0.80[ASN][1000 genomes] |
| rs57415754 | 0.80[ASN][1000 genomes] |
| rs6820960 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7690118 | 0.90[ASN][1000 genomes] |
| rs7690472 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461377 | chr4:62368762-62883431 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv594328 | chr4:62368762-62883431 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004815 | chr4:62398737-62553769 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv537110 | chr4:62398737-62553769 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879077 | chr4:62419426-62545435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:62512200-62512800 | Enhancers | H1 Cell Line | embryonic stem cell |
| 2 | chr4:62512200-62512800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
