Variant report

Variant	rs11938303
Chromosome Location	chr4:89729826-89729827
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:89723110..89726079-chr4:89728222..89730870,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1921682	1.00[AMR][1000 genomes]
rs57440518	1.00[AMR][1000 genomes]
rs6826878	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89697600-89733000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:89707400-89734800	Weak transcription	Gastric	stomach
3	chr4:89707400-89742800	Weak transcription	Thymus	Thymus
4	chr4:89707600-89739800	Weak transcription	Aorta	Aorta
5	chr4:89708200-89730800	Weak transcription	Colonic Mucosa	Colon
6	chr4:89709200-89741200	Weak transcription	Fetal Kidney	kidney
7	chr4:89709800-89733400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:89711400-89733400	Weak transcription	K562	blood
9	chr4:89711800-89730200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:89714000-89730200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:89714200-89730200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:89714200-89730200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:89714200-89732200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:89714200-89739800	Weak transcription	Hela-S3	cervix
15	chr4:89714200-89742000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:89714400-89730200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:89721400-89730800	Weak transcription	Ovary	ovary
18	chr4:89723400-89730400	Weak transcription	HSMM	muscle
19	chr4:89723800-89732400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:89724200-89730200	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:89724200-89730800	Weak transcription	Right Atrium	heart
22	chr4:89724200-89734800	Weak transcription	Left Ventricle	heart
23	chr4:89724400-89730200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:89724400-89730200	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:89724400-89730200	Weak transcription	Fetal Stomach	stomach
26	chr4:89724400-89737600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:89724400-89739800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:89724400-89741600	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:89724400-89744000	Weak transcription	Lung	lung
30	chr4:89724800-89730200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:89725000-89732400	Weak transcription	Primary T cells from cord blood	blood
32	chr4:89725000-89732400	Enhancers	Fetal Intestine Large	intestine
33	chr4:89725000-89732600	Weak transcription	Placenta	Placenta
34	chr4:89725000-89734800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:89725000-89737600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:89725200-89730200	Weak transcription	NHLF	lung
37	chr4:89725400-89730800	Weak transcription	Small Intestine	intestine
38	chr4:89725600-89730400	Enhancers	Adipose Nuclei	Adipose
39	chr4:89725800-89730400	Weak transcription	Osteobl	bone
40	chr4:89725800-89743000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr4:89726000-89737600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr4:89726600-89730200	Weak transcription	Brain Anterior Caudate	brain
43	chr4:89727600-89731800	Enhancers	Fetal Intestine Small	intestine
44	chr4:89727800-89730200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr4:89728000-89730000	Enhancers	Liver	Liver
46	chr4:89728200-89730200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:89728200-89730800	Enhancers	HepG2	liver
48	chr4:89728400-89730400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:89728400-89730400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr4:89728600-89730000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links