Variant report

Variant	rs11938368
Chromosome Location	chr4:44918485-44918486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10938374	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1111981	0.92[ASN][1000 genomes]
rs11723242	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12509720	0.92[ASN][1000 genomes]
rs13127633	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13139707	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1390911	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1496981	0.83[AFR][1000 genomes]
rs1496994	0.92[ASN][1000 genomes]
rs1845949	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2173109	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28526098	0.95[ASN][1000 genomes]
rs4074007	0.92[ASN][1000 genomes]
rs4515194	0.82[EUR][1000 genomes]
rs4694791	0.92[ASN][1000 genomes]
rs4695066	0.92[ASN][1000 genomes]
rs6447391	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6847133	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656009	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7657226	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44917800-44918600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:44917800-44918600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:44918200-44918600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:44918200-44918800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr4:44918200-44919200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:44918400-44918800	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr4:44918400-44918800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:44918400-44918800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:44918400-44918800	Active TSS	A549	lung
10	chr4:44918400-44918800	Active TSS	Monocytes-CD14+_RO01746	blood
11	chr4:44918400-44919000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:44918400-44919000	Active TSS	Brain Hippocampus Middle	brain
13	chr4:44918400-44919000	Active TSS	Brain Substantia Nigra	brain
14	chr4:44918400-44919000	Active TSS	Psoas Muscle	Psoas
15	chr4:44918400-44919000	Active TSS	Right Atrium	heart
16	chr4:44918400-44919000	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr4:44918400-44919000	Active TSS	HMEC	breast
18	chr4:44918400-44919000	Active TSS	NHDF-Ad	bronchial
19	chr4:44918400-44919200	Active TSS	Muscle Satellite Cultured Cells	--
20	chr4:44918400-44919200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:44918400-44919200	Active TSS	Aorta	Aorta
22	chr4:44918400-44919200	Active TSS	Brain Angular Gyrus	brain
23	chr4:44918400-44919200	Active TSS	Brain Anterior Caudate	brain
24	chr4:44918400-44919200	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr4:44918400-44919200	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr4:44918400-44919200	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr4:44918400-44919400	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links