Variant report

Variant	rs11939238
Chromosome Location	chr4:80427262-80427263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10028776	0.84[EUR][1000 genomes]
rs1074134	0.81[AFR][1000 genomes]
rs11933208	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11943366	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12108416	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13118924	0.81[AFR][1000 genomes]
rs1440862	0.81[AFR][1000 genomes]
rs1595964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003761	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003907	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003952	1.00[EUR][1000 genomes]
rs1899232	0.81[AFR][1000 genomes]
rs3906810	0.84[EUR][1000 genomes]
rs4513593	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58883855	0.89[EUR][1000 genomes]
rs61111325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723243	0.81[AFR][1000 genomes]
rs7663844	0.81[AFR][1000 genomes]
rs7684683	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80426000-80427800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:80426800-80435200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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