Variant report

Variant	rs11939317
Chromosome Location	chr11:28229237-28229238
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10013348	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1084778	0.86[EUR][1000 genomes]
rs1084779	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1215053	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640735	0.93[ASN][1000 genomes]
rs12640871	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12648529	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs165240	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs165243	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs165248	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs165249	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs165253	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027012	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17027019	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs184816	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2605542	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs260891	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs260900	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs260903	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs356548	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs589940	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs595656	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60404606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6813356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6844839	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6858639	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72686424	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72686434	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72686436	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72686449	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7669591	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7673305	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs783919	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs783926	0.83[EUR][1000 genomes]
rs783927	0.86[EUR][1000 genomes]
rs783935	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs783944	0.86[EUR][1000 genomes]
rs783946	0.86[EUR][1000 genomes]
rs783948	0.83[EUR][1000 genomes]
rs783953	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs783954	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs783956	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9684842	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897150	chr11:28110210-28302792	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28178200-28239400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:28192000-28234000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:28195600-28234000	Weak transcription	Primary B cells from cord blood	blood
4	chr11:28195600-28234000	Weak transcription	NH-A	brain
5	chr11:28195600-28249000	Weak transcription	HSMM	muscle
6	chr11:28212800-28244000	Weak transcription	Left Ventricle	heart
7	chr11:28214000-28256800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:28214200-28233400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:28214200-28234000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:28214400-28233200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:28214400-28233600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:28214800-28232800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:28215200-28233600	Weak transcription	Dnd41	blood
14	chr11:28215200-28234200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:28215400-28235400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:28217000-28240200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:28217200-28232600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:28217200-28232800	Weak transcription	Adipose Nuclei	Adipose
19	chr11:28217400-28233600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:28217400-28233800	Weak transcription	Liver	Liver
21	chr11:28217600-28231200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:28219800-28237400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:28221800-28238800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:28224200-28233400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:28224600-28239000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:28229000-28234000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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