Variant report

Variant	rs11939735
Chromosome Location	chr4:28011943-28011944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10470827	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11932457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880102	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2192545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28520329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656037	0.83[AMR][1000 genomes]
rs9993475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007066	chr4:28001862-28131764	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878772	chr4:28006005-28030505	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28006000-28012400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:28011200-28012000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:28011400-28012800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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