Variant report

Variant	rs11940322
Chromosome Location	chr4:76741756-76741757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76741166..76744063-chr4:76769113..76771616,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60676359	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6821804	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6837945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72859520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv3467669	chr4:76741328-76746326	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3467670	chr4:76741328-76746326	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76736200-76743400	Weak transcription	Fetal Brain Male	brain
2	chr4:76736400-76742200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:76736400-76743600	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:76736400-76744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:76736600-76742000	Weak transcription	Esophagus	oesophagus
6	chr4:76736600-76743400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:76736600-76743600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:76736600-76743600	Weak transcription	Gastric	stomach
9	chr4:76736600-76744600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:76736600-76763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:76736800-76742400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:76736800-76742400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:76736800-76742400	Weak transcription	HMEC	breast
14	chr4:76736800-76743400	Weak transcription	Fetal Heart	heart
15	chr4:76736800-76743400	Weak transcription	Left Ventricle	heart
16	chr4:76736800-76745000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:76736800-76745000	Weak transcription	Ovary	ovary
18	chr4:76736800-76745000	Weak transcription	K562	blood
19	chr4:76736800-76746400	Weak transcription	Brain Anterior Caudate	brain
20	chr4:76736800-76753000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:76737000-76741800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:76737000-76745200	Weak transcription	Fetal Lung	lung
23	chr4:76737000-76753000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:76737200-76743800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:76737400-76745000	Weak transcription	Fetal Intestine Small	intestine
26	chr4:76737600-76751000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:76738000-76743200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:76738000-76743400	Weak transcription	Lung	lung
29	chr4:76738200-76743200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:76738200-76743200	Weak transcription	A549	lung
31	chr4:76738200-76743600	Weak transcription	HSMM	muscle
32	chr4:76738200-76745000	Weak transcription	HSMMtube	muscle
33	chr4:76738200-76745200	Weak transcription	Osteobl	bone
34	chr4:76738200-76748400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:76738200-76753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:76738400-76742000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:76738400-76744800	Weak transcription	NH-A	brain
38	chr4:76738400-76751800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:76738600-76743800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr4:76738600-76744000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:76738800-76745000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:76740200-76741800	Weak transcription	Pancreas	Pancrea
43	chr4:76741200-76742600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr4:76741400-76742400	Enhancers	HepG2	liver

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