Variant report

Variant	rs11941469
Chromosome Location	chr4:79148953-79148954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10027981	0.83[EUR][1000 genomes]
rs10031070	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10518197	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11098094	0.84[EUR][1000 genomes]
rs11722519	0.89[EUR][1000 genomes]
rs11725497	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502886	0.80[EUR][1000 genomes]
rs12510741	0.83[EUR][1000 genomes]
rs13115668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454896	0.85[JPT][hapmap]
rs1454897	0.84[EUR][1000 genomes]
rs1470989	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1869646	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1952399	0.83[EUR][1000 genomes]
rs2124146	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2168203	0.83[EUR][1000 genomes]
rs28493765	0.83[EUR][1000 genomes]
rs2867011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2867012	0.83[EUR][1000 genomes]
rs4859524	0.80[EUR][1000 genomes]
rs4859918	0.82[EUR][1000 genomes]
rs4859920	0.82[EUR][1000 genomes]
rs6833721	0.86[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs7694740	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv999844	chr4:79092549-79165869	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879503	chr4:79108589-79163162	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79144200-79176000	Weak transcription	Psoas Muscle	Psoas
2	chr4:79144600-79149400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:79144600-79149800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:79144600-79150200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:79144600-79179000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:79145000-79150000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:79145400-79150000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:79148400-79149400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:79148600-79149000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:79148600-79149000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:79148600-79149000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:79148600-79149000	Enhancers	Right Ventricle	heart
13	chr4:79148600-79151400	Enhancers	Fetal Heart	heart
14	chr4:79148800-79149000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:79148800-79150000	Weak transcription	HepG2	liver
16	chr4:79148800-79152000	Enhancers	HUES48 Cell Line	embryonic stem cell

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