Variant report

Variant	rs11941981
Chromosome Location	chr4:110646708-110646709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110645234..110647516-chr4:110657151..110659636,2	K562	blood:
2	chr4:110642344..110648627-chr4:110649058..110653474,10	K562	blood:
3	chr4:110644586..110647516-chr4:110657103..110659636,3	K562	blood:
4	chr4:110645601..110647789-chr4:110720633..110722746,2	K562	blood:
5	chr4:110646163..110648808-chr4:110670582..110673028,2	K562	blood:
6	chr4:110643110..110645754-chr4:110645893..110647696,2	K562	blood:

Variant related genes	Relation type
ENSG00000123739	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17040795	1.00[EUR][1000 genomes]
rs5030558	1.00[EUR][1000 genomes]
rs5030568	1.00[EUR][1000 genomes]
rs5030569	1.00[EUR][1000 genomes]
rs5030574	1.00[EUR][1000 genomes]
rs5030583	1.00[EUR][1000 genomes]
rs5030586	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv595142	chr4:110609481-110656730	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110625000-110649200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:110625000-110649400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:110625000-110650400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:110625000-110650400	Weak transcription	Spleen	Spleen
5	chr4:110625200-110649200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:110625200-110649200	Weak transcription	NH-A	brain
7	chr4:110625200-110650200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:110625200-110650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:110625400-110648800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:110625400-110649000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:110625400-110649400	Weak transcription	HUVEC	blood vessel
12	chr4:110625800-110648600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:110625800-110648800	Weak transcription	Hela-S3	cervix
14	chr4:110625800-110649400	Weak transcription	Brain Substantia Nigra	brain
15	chr4:110626000-110649600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:110629000-110649200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:110633000-110649000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:110634400-110649200	Weak transcription	Osteobl	bone
19	chr4:110634800-110649200	Weak transcription	Fetal Brain Male	brain
20	chr4:110635000-110650400	Weak transcription	Gastric	stomach
21	chr4:110635400-110650000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:110635600-110649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:110635800-110647400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:110635800-110648800	Weak transcription	Ovary	ovary
25	chr4:110635800-110648800	Weak transcription	HMEC	breast
26	chr4:110635800-110649800	Weak transcription	Psoas Muscle	Psoas
27	chr4:110635800-110650000	Weak transcription	Right Ventricle	heart
28	chr4:110635800-110650400	Weak transcription	Lung	lung
29	chr4:110638000-110649000	Weak transcription	HSMMtube	muscle
30	chr4:110638200-110649400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr4:110638200-110649600	Weak transcription	Fetal Brain Female	brain
32	chr4:110638200-110649800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:110638200-110650000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:110638200-110650200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:110638400-110649000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:110638400-110649200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:110638400-110649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:110638400-110649200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:110638400-110649400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:110638400-110649600	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:110638400-110649600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:110638400-110650000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr4:110638600-110648600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:110638600-110649000	Weak transcription	Dnd41	blood
45	chr4:110638600-110649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:110638600-110649600	Weak transcription	Adipose Nuclei	Adipose
47	chr4:110638600-110649600	Weak transcription	Placenta	Placenta
48	chr4:110638600-110650200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr4:110638600-110650400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:110638800-110647200	Weak transcription	Pancreas	Pancrea

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