Variant report

Variant	rs11943061
Chromosome Location	chr4:130036655-130036656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:130028612..130032885-chr4:130034533..130038076,4	K562	blood:
2	chr4:130013027..130015961-chr4:130034387..130037215,2	MCF-7	breast:
3	chr4:130036050..130038012-chr4:130049891..130052657,2	K562	blood:

Variant related genes	Relation type
ENSG00000151466	Chromatin interaction
ENSG00000151470	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11931573	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11934229	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11934548	1.00[AMR][1000 genomes]
rs11936163	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940367	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11940774	1.00[AMR][1000 genomes]
rs11941024	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941212	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943407	1.00[AMR][1000 genomes]
rs11947306	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130017600-130040400	Weak transcription	Lung	lung
2	chr4:130018000-130038000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:130029200-130040000	Weak transcription	Esophagus	oesophagus
4	chr4:130029400-130041200	Weak transcription	Spleen	Spleen
5	chr4:130029600-130038600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:130031400-130036800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr4:130031800-130036800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:130031800-130037400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:130031800-130037400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:130031800-130039800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:130031800-130040000	Weak transcription	Dnd41	blood
12	chr4:130032000-130037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:130032400-130037800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:130032400-130038000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:130032400-130038200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:130032400-130040000	Weak transcription	Primary T cells from cord blood	blood
17	chr4:130032400-130052200	Weak transcription	Aorta	Aorta
18	chr4:130033400-130036800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:130033600-130036800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr4:130034000-130036800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:130034800-130038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:130036000-130044600	Weak transcription	Pancreas	Pancrea
23	chr4:130036200-130037800	Weak transcription	Left Ventricle	heart
24	chr4:130036600-130038400	Weak transcription	Monocytes-CD14+_RO01746	blood

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