Variant report

Variant	rs11945313
Chromosome Location	chr4:85907969-85907970
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11947032	1.00[AMR][1000 genomes]
rs11947757	0.84[ASW][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11945313	KLRC1	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85888800-85908000	Weak transcription	Pancreas	Pancrea
2	chr4:85888800-85909400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:85889000-85908200	Weak transcription	Aorta	Aorta
4	chr4:85889000-85908400	Weak transcription	Ovary	ovary
5	chr4:85889000-85909200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:85906800-85927200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:85907200-85908000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:85907400-85908000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:85907400-85908000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:85907800-85908000	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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