Variant report

Variant	rs11946019
Chromosome Location	chr4:78510447-78510448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2866440	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3098855	1.00[EUR][1000 genomes]
rs3098856	1.00[EUR][1000 genomes]
rs3113354	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs920666	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78506800-78510600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:78508600-78513800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:78508600-78514400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:78508600-78515200	Weak transcription	Spleen	Spleen
5	chr4:78508800-78514200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:78509200-78513800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:78510000-78513800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:78510200-78513800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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