Variant report

Variant	rs11947179
Chromosome Location	chr4:15482245-15482246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15479740..15482605-chr4:15655501..15658427,3	MCF-7	breast:
2	chr4:15481667..15484454-chr4:15772642..15775403,2	MCF-7	breast:
3	chr4:15480883..15483744-chr4:15651050..15653259,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15481200-15485200	Weak transcription	Right Ventricle	heart
2	chr4:15481400-15482400	Weak transcription	Left Ventricle	heart
3	chr4:15481400-15486200	Weak transcription	Spleen	Spleen
4	chr4:15481600-15482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:15481600-15482400	Weak transcription	Fetal Intestine Large	intestine
6	chr4:15481600-15482400	Weak transcription	Lung	lung
7	chr4:15481600-15482400	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:15481600-15482400	Enhancers	NHDF-Ad	bronchial
9	chr4:15481600-15482600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:15481600-15482600	Enhancers	Adipose Nuclei	Adipose
11	chr4:15481600-15482600	Enhancers	Fetal Heart	heart
12	chr4:15481600-15484000	Weak transcription	Aorta	Aorta
13	chr4:15481600-15484200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:15481600-15484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:15481600-15484400	Weak transcription	Placenta	Placenta
16	chr4:15481600-15484400	Weak transcription	K562	blood
17	chr4:15481600-15484600	Weak transcription	Right Atrium	heart
18	chr4:15481600-15488000	Weak transcription	HSMMtube	muscle
19	chr4:15481600-15490200	Weak transcription	Esophagus	oesophagus
20	chr4:15481600-15498600	Weak transcription	Liver	Liver
21	chr4:15481600-15519000	Weak transcription	Gastric	stomach
22	chr4:15481800-15482400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:15481800-15482400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:15481800-15482400	Enhancers	Brain Hippocampus Middle	brain
25	chr4:15481800-15482400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:15481800-15482400	Enhancers	HepG2	liver
27	chr4:15481800-15482600	Enhancers	Brain Angular Gyrus	brain
28	chr4:15481800-15482600	Enhancers	Colon Smooth Muscle	Colon
29	chr4:15481800-15483200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:15481800-15483200	Weak transcription	Fetal Kidney	kidney
31	chr4:15481800-15484000	Weak transcription	Ovary	ovary
32	chr4:15481800-15488200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr4:15482000-15482400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:15482000-15482400	Enhancers	Brain Anterior Caudate	brain
35	chr4:15482000-15482400	Enhancers	Fetal Brain Male	brain
36	chr4:15482000-15482400	Enhancers	Fetal Lung	lung
37	chr4:15482000-15482400	Enhancers	Fetal Muscle Leg	muscle
38	chr4:15482000-15482400	Flanking Active TSS	NHLF	lung
39	chr4:15482000-15482600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:15482000-15482600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:15482000-15482600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:15482000-15482600	Enhancers	Brain Germinal Matrix	brain
43	chr4:15482000-15482600	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr4:15482000-15482600	Enhancers	HMEC	breast
45	chr4:15482000-15482600	Genic enhancers	Osteobl	bone
46	chr4:15482000-15482800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr4:15482000-15482800	Enhancers	NH-A	brain
48	chr4:15482000-15483200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:15482000-15484000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:15482000-15484200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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