Variant report

Variant	rs11949084
Chromosome Location	chr5:177626370-177626371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17639067	0.80[EUR][1000 genomes]
rs7381117	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1017664	chr5:177578194-177633116	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
5	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
6	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
8	esv3383736	chr5:177626331-177626495	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177621200-177626600	Weak transcription	Esophagus	oesophagus
2	chr5:177621400-177626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:177621600-177630800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:177622200-177630200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:177622400-177630800	Weak transcription	Liver	Liver
6	chr5:177623800-177626800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:177624000-177630800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:177624200-177626600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:177624200-177627000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:177624200-177630800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:177624200-177630800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:177624400-177628800	Weak transcription	K562	blood
13	chr5:177625400-177628800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:177625400-177629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:177625600-177628000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:177625600-177629600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr5:177625800-177626400	Enhancers	Primary hematopoietic stem cells	blood
18	chr5:177626200-177628600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr5:177626200-177628600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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