Variant report

Variant	rs11953093
Chromosome Location	chr5:96735152-96735153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11949299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949906	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11949978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11950055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11950085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11950117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11950316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11950486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11952283	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11954432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11958872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11959208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11960675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17082251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087490	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58023467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58234144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59220198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59393978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61454257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73135560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73137230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73137235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73137244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73150774	0.90[AMR][1000 genomes]
rs7734072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv830415	chr5:96597763-96764157	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1025654	chr5:96613448-96817528	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96728800-96735600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:96733800-96735200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:96734600-96735800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links