Variant report

Variant	rs11953813
Chromosome Location	chr5:9060435-9060436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11954327	0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955416	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881438	chr5:8728874-9695667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv461944	chr5:8758041-9209831	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv597069	chr5:8758041-9209831	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1016937	chr5:8824417-9402871	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv537638	chr5:8824417-9402871	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv918004	chr5:8824417-9402871	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1015378	chr5:9053542-9617963	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
8	nsv537640	chr5:9053542-9617963	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:9038800-9063600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:9040200-9064600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:9040800-9122000	Weak transcription	Colonic Mucosa	Colon
4	chr5:9042200-9066600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:9044800-9061400	Weak transcription	Aorta	Aorta
6	chr5:9044800-9065200	Weak transcription	Pancreas	Pancrea
7	chr5:9046600-9065400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:9050000-9065200	Weak transcription	Right Ventricle	heart
9	chr5:9051000-9065200	Weak transcription	Left Ventricle	heart
10	chr5:9051800-9065200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:9053200-9067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:9053800-9077800	Weak transcription	Fetal Heart	heart
13	chr5:9054000-9061200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:9054400-9060600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:9054400-9062600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:9054600-9061800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr5:9054600-9062600	Weak transcription	Esophagus	oesophagus
18	chr5:9055200-9061400	Enhancers	NHLF	lung
19	chr5:9055600-9060600	Weak transcription	Fetal Stomach	stomach
20	chr5:9056400-9069000	Weak transcription	Lung	lung
21	chr5:9056800-9061600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:9057000-9061000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:9057200-9060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:9057200-9069200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:9057400-9060800	Enhancers	NHEK	skin
26	chr5:9057400-9061400	Enhancers	NHDF-Ad	bronchial
27	chr5:9057600-9060800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:9057600-9061000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr5:9057600-9061000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:9057600-9061000	Enhancers	HMEC	breast
31	chr5:9057800-9061000	Enhancers	NH-A	brain
32	chr5:9057800-9061200	Enhancers	Osteobl	bone
33	chr5:9057800-9061400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:9057800-9061400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:9058000-9061400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:9058200-9062400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:9058400-9060800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:9058800-9060800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:9058800-9061400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:9058800-9061600	Enhancers	Fetal Muscle Leg	muscle
41	chr5:9059200-9061800	Weak transcription	Brain Hippocampus Middle	brain
42	chr5:9059200-9062600	Weak transcription	Fetal Intestine Large	intestine
43	chr5:9059200-9063000	Weak transcription	Dnd41	blood
44	chr5:9059200-9064000	Weak transcription	Brain Angular Gyrus	brain
45	chr5:9059600-9060800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr5:9059600-9060800	Enhancers	HUVEC	blood vessel
47	chr5:9059800-9060600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr5:9059800-9060600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:9060000-9060800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:9060000-9060800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links