Variant report

Variant	rs11954332
Chromosome Location	chr5:107971329-107971330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11948211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11950061	1.00[AMR][1000 genomes]
rs11953717	1.00[AMR][1000 genomes]
rs11957085	1.00[AMR][1000 genomes]
rs11960174	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55973173	1.00[AMR][1000 genomes]
rs56274856	1.00[AMR][1000 genomes]
rs60901774	1.00[AMR][1000 genomes]
rs73780524	1.00[AMR][1000 genomes]
rs73780526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107954400-107971400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:107966000-107971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:107966000-107971600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107969200-107971800	Enhancers	NHDF-Ad	bronchial
5	chr5:107969800-107972600	Enhancers	GM12878-XiMat	blood
6	chr5:107970000-107971800	Weak transcription	Aorta	Aorta
7	chr5:107970200-107977800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:107970600-107977800	Weak transcription	Osteobl	bone
9	chr5:107970800-107972800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:107970800-107974800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:107971000-107972200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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