Variant report

Variant	rs11954796
Chromosome Location	chr5:118586630-118586631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118586532..118588054-chr5:118602135..118604215,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1394625	1.00[AFR][1000 genomes]
rs4451082	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs55703318	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1019788	chr5:118488501-118607405	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv537882	chr5:118488501-118607405	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1034616	chr5:118506348-118600391	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1031914	chr5:118516878-118589497	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118486000-118588600	Weak transcription	Right Ventricle	heart
2	chr5:118489800-118591200	Weak transcription	Colonic Mucosa	Colon
3	chr5:118514400-118589000	Weak transcription	Pancreas	Pancrea
4	chr5:118514400-118591400	Weak transcription	Esophagus	oesophagus
5	chr5:118535000-118587400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:118535000-118588200	Weak transcription	Lung	lung
7	chr5:118535000-118589000	Weak transcription	Aorta	Aorta
8	chr5:118538200-118590600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:118539200-118590000	Weak transcription	Fetal Kidney	kidney
10	chr5:118539200-118591000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:118544600-118591400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:118550000-118588800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:118555000-118586800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:118555200-118588800	Weak transcription	NHDF-Ad	bronchial
15	chr5:118555200-118590800	Weak transcription	Hela-S3	cervix
16	chr5:118556800-118587400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:118557400-118591400	Weak transcription	HepG2	liver
18	chr5:118558400-118588400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr5:118558600-118588800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:118559400-118589800	Weak transcription	HSMM	muscle
21	chr5:118566000-118589200	Weak transcription	A549	lung
22	chr5:118570200-118590400	Weak transcription	Left Ventricle	heart
23	chr5:118570400-118588600	Weak transcription	Brain Angular Gyrus	brain
24	chr5:118570800-118589000	Weak transcription	GM12878-XiMat	blood
25	chr5:118570800-118589600	Weak transcription	Fetal Brain Female	brain
26	chr5:118570800-118590200	Weak transcription	Fetal Muscle Leg	muscle
27	chr5:118570800-118590800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:118570800-118591000	Weak transcription	Thymus	Thymus
29	chr5:118571200-118591400	Weak transcription	Placenta	Placenta
30	chr5:118571400-118587200	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:118571400-118588600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:118571600-118589000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr5:118571600-118589600	Weak transcription	Fetal Lung	lung
34	chr5:118571800-118591000	Weak transcription	Fetal Heart	heart
35	chr5:118572000-118588800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:118575200-118589200	Weak transcription	Dnd41	blood
37	chr5:118575400-118586800	Weak transcription	Primary T cells from cord blood	blood
38	chr5:118577200-118590200	Weak transcription	Fetal Intestine Small	intestine
39	chr5:118577200-118590800	Weak transcription	Fetal Stomach	stomach
40	chr5:118577400-118591600	Weak transcription	Gastric	stomach
41	chr5:118577800-118588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:118580000-118587000	Weak transcription	Liver	Liver
43	chr5:118580200-118587000	Weak transcription	Fetal Brain Male	brain
44	chr5:118580400-118588200	Weak transcription	Ovary	ovary
45	chr5:118580400-118591400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr5:118580400-118591400	Weak transcription	K562	blood
47	chr5:118580800-118586800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr5:118581000-118588800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:118581000-118590200	Weak transcription	Fetal Intestine Large	intestine
50	chr5:118582200-118589000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links