Variant report

Variant	rs11955055
Chromosome Location	chr5:36060251-36060252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36058460..36062314-chr5:36063254..36065361,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16902744	1.00[AMR][1000 genomes]
rs16902748	1.00[AMR][1000 genomes]
rs3913483	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:36049400-36065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:36052400-36061200	Enhancers	Fetal Thymus	thymus
7	chr5:36054400-36066200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:36056600-36066200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:36058400-36061200	Enhancers	Thymus	Thymus
10	chr5:36059200-36061000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:36059600-36060400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:36059600-36060400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr5:36059600-36060600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:36059600-36060800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:36059800-36060400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:36059800-36060800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:36059800-36060800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:36059800-36060800	Flanking Active TSS	Dnd41	blood
19	chr5:36059800-36060800	Enhancers	NHEK	skin
20	chr5:36059800-36061000	Enhancers	Hela-S3	cervix
21	chr5:36059800-36061200	Enhancers	Placenta	Placenta
22	chr5:36060000-36060400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:36060000-36060400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:36060000-36060400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:36060000-36060400	Enhancers	HSMM	muscle
26	chr5:36060000-36060400	Flanking Active TSS	NHDF-Ad	bronchial
27	chr5:36060000-36060800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:36060000-36060800	Enhancers	HMEC	breast

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