Variant report

Variant	rs11955200
Chromosome Location	chr5:96494284-96494285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96351534..96353188-chr5:96493803..96496020,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61310706	1.00[EUR][1000 genomes]
rs73143193	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73143197	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150774	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv830413	chr5:96450582-96509294	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96478400-96495200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:96478400-96507800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:96478800-96495200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:96484400-96495400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:96489200-96495200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:96491800-96494400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr5:96492200-96498000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:96492200-96510200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:96492400-96494600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:96492600-96494400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:96492600-96496000	Weak transcription	Small Intestine	intestine
12	chr5:96492800-96495200	Weak transcription	Pancreas	Pancrea
13	chr5:96493000-96494600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:96493600-96495200	Weak transcription	HMEC	breast
15	chr5:96493600-96495400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:96493600-96495600	ZNF genes & repeats	A549	lung
17	chr5:96493600-96498200	Strong transcription	Primary B cells from cord blood	blood
18	chr5:96493600-96501600	Weak transcription	NHLF	lung
19	chr5:96493800-96494400	ZNF genes & repeats	Fetal Brain Male	brain
20	chr5:96493800-96494600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:96493800-96494600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:96493800-96495400	Weak transcription	Brain Angular Gyrus	brain
23	chr5:96493800-96497800	Weak transcription	HUVEC	blood vessel
24	chr5:96494000-96494400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:96494000-96494400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:96494000-96494400	ZNF genes & repeats	Liver	Liver
27	chr5:96494000-96494600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr5:96494000-96494800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
29	chr5:96494000-96494800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr5:96494000-96494800	ZNF genes & repeats	Fetal Thymus	thymus
31	chr5:96494000-96494800	ZNF genes & repeats	Osteobl	bone
32	chr5:96494000-96495000	Weak transcription	Primary T cells from cord blood	blood
33	chr5:96494000-96495000	Weak transcription	Brain Substantia Nigra	brain
34	chr5:96494000-96495000	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr5:96494000-96495000	ZNF genes & repeats	Dnd41	blood
36	chr5:96494000-96495400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:96494000-96495400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr5:96494000-96495600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr5:96494000-96495600	ZNF genes & repeats	Fetal Intestine Small	intestine
40	chr5:96494000-96495800	Strong transcription	Thymus	Thymus
41	chr5:96494000-96496200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:96494000-96496600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:96494000-96496600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr5:96494000-96496600	Weak transcription	NHDF-Ad	bronchial
45	chr5:96494000-96502800	Weak transcription	Psoas Muscle	Psoas
46	chr5:96494200-96494400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
47	chr5:96494200-96494400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr5:96494200-96494400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:96494200-96494400	Enhancers	Esophagus	oesophagus
50	chr5:96494200-96494400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links