Variant report

Variant	rs11955316
Chromosome Location	chr5:76041276-76041277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11949036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873536	1.00[AMR][1000 genomes]
rs2227765	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227776	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227798	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2227801	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76026400-76042800	Weak transcription	Right Atrium	heart
2	chr5:76030600-76046600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:76035600-76043600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:76035800-76046400	Weak transcription	HepG2	liver
5	chr5:76038800-76041400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:76041200-76042000	Enhancers	Fetal Lung	lung
7	chr5:76041200-76042200	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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