Variant report

Variant	rs11955442
Chromosome Location	chr5:112292449-112292450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61741889	1.00[AMR][1000 genomes]
rs61747099	1.00[AMR][1000 genomes]
rs6869064	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896641	1.00[AMR][1000 genomes]
rs71577430	0.80[AFR][1000 genomes]
rs7721560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7726290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731843	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1019756	chr5:112242315-112325943	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112289400-112293400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112291600-112297600	Enhancers	HepG2	liver
3	chr5:112291800-112292600	Enhancers	A549	lung
4	chr5:112291800-112294400	Enhancers	Brain Germinal Matrix	brain
5	chr5:112292200-112292600	Enhancers	Fetal Muscle Trunk	muscle
6	chr5:112292200-112294400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:112292400-112292600	Enhancers	Lung	lung
8	chr5:112292400-112293400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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