Variant report

Variant	rs11955554
Chromosome Location	chr5:147431071-147431072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11951613	0.89[AFR][1000 genomes]
rs11951614	0.89[AFR][1000 genomes]
rs11955612	0.89[AFR][1000 genomes]
rs11957191	0.89[AFR][1000 genomes]
rs11958866	0.89[AFR][1000 genomes]
rs17718385	0.89[AFR][1000 genomes]
rs17718403	0.89[AFR][1000 genomes]
rs17775044	0.89[AFR][1000 genomes]
rs17775080	0.89[AFR][1000 genomes]
rs2032864	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2032865	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2032867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2112768	0.89[AFR][1000 genomes]
rs4705052	0.89[AFR][1000 genomes]
rs4705053	0.84[AFR][1000 genomes]
rs4705219	0.89[AFR][1000 genomes]
rs4705220	0.89[AFR][1000 genomes]
rs5014785	0.89[AFR][1000 genomes]
rs58212044	0.89[AFR][1000 genomes]
rs58237290	0.89[AFR][1000 genomes]
rs6872206	0.89[AFR][1000 genomes]
rs6873949	0.89[AFR][1000 genomes]
rs6881420	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933016	chr5:147395849-147453701	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147413600-147434200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:147426600-147433400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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