Variant report

Variant	rs11956228
Chromosome Location	chr5:147281308-147281309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10477355	0.90[ASN][1000 genomes]
rs11958481	0.90[ASN][1000 genomes]
rs17107413	0.90[ASN][1000 genomes]
rs17625543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17703848	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835968	0.90[ASN][1000 genomes]
rs2304067	0.90[ASN][1000 genomes]
rs28838279	0.80[EUR][1000 genomes]
rs58022905	0.80[EUR][1000 genomes]
rs6580507	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862197	0.90[ASN][1000 genomes]
rs73263247	0.90[ASN][1000 genomes]
rs7706789	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147273400-147289000	Weak transcription	Left Ventricle	heart
2	chr5:147275600-147283200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:147277400-147284800	Enhancers	NH-A	brain
4	chr5:147279000-147284800	Weak transcription	Osteobl	bone
5	chr5:147279600-147283600	Weak transcription	HMEC	breast
6	chr5:147279800-147285200	Weak transcription	Hela-S3	cervix
7	chr5:147280200-147282600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:147280400-147282600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:147280400-147286000	Weak transcription	Stomach Mucosa	stomach
10	chr5:147280600-147281400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:147280600-147281400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:147280600-147281600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:147280600-147281800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:147280600-147282600	Enhancers	Aorta	Aorta
15	chr5:147280600-147283400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:147280800-147281600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:147280800-147281800	Enhancers	Fetal Heart	heart
18	chr5:147281000-147281400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:147281000-147281400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:147281000-147281400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr5:147281000-147281400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:147281200-147281400	Enhancers	HSMMtube	muscle
23	chr5:147281200-147281600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links