Variant report

Variant	rs11956529
Chromosome Location	chr5:120739531-120739532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10078239	0.87[EUR][1000 genomes]
rs1120917	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1120918	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11948148	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11948196	1.00[AFR][1000 genomes]
rs11948267	1.00[AFR][1000 genomes]
rs11948268	1.00[AFR][1000 genomes]
rs11951581	1.00[AFR][1000 genomes]
rs11954625	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11954691	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11955812	1.00[AFR][1000 genomes]
rs11956004	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11956670	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17457980	0.87[EUR][1000 genomes]
rs17458039	0.87[EUR][1000 genomes]
rs17458136	0.87[EUR][1000 genomes]
rs17458226	0.87[EUR][1000 genomes]
rs17458310	0.87[EUR][1000 genomes]
rs17458337	0.87[EUR][1000 genomes]
rs17517621	0.87[EUR][1000 genomes]
rs17517691	0.87[EUR][1000 genomes]
rs73270233	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73270239	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73270242	0.91[EUR][1000 genomes]
rs73270246	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73270248	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73283858	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599606	chr5:120219340-120776767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882797	chr5:120359319-120757262	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv33642	chr5:120380525-120848760	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2754268	chr5:120398198-120745053	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1023679	chr5:120689805-120890257	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv882803	chr5:120722413-120873947	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv882804	chr5:120732139-120808379	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882805	chr5:120732139-120818132	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120738800-120739800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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