Variant report

Variant	rs11957625
Chromosome Location	chr5:106452564-106452565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10900899	1.00[EUR][1000 genomes]
rs11242630	1.00[EUR][1000 genomes]
rs11950838	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959317	0.82[EUR][1000 genomes]
rs56307182	0.92[EUR][1000 genomes]
rs56379720	0.90[EUR][1000 genomes]
rs72780158	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782143	0.92[EUR][1000 genomes]
rs72782150	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106444200-106452600	Weak transcription	Fetal Heart	heart
2	chr5:106448400-106454000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:106452000-106453000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:106452000-106454800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:106452400-106452600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:106452400-106453000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:106452400-106453200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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