Variant report

Variant	rs11958087
Chromosome Location	chr5:52664692-52664693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55728546	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56179015	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56266381	0.83[EUR][1000 genomes]
rs62357785	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62357786	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62357787	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62357795	0.83[EUR][1000 genomes]
rs62357821	0.83[EUR][1000 genomes]
rs62357822	0.82[EUR][1000 genomes]
rs62357823	0.82[EUR][1000 genomes]
rs62357824	0.82[EUR][1000 genomes]
rs62357826	0.82[EUR][1000 genomes]
rs62357828	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv830297	chr5:52492494-52707758	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv508356	chr5:52646168-52703120	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52662600-52674200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:52663200-52666000	Enhancers	NHDF-Ad	bronchial
3	chr5:52663400-52665800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:52663400-52665800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:52663600-52665000	Enhancers	A549	lung
6	chr5:52663800-52665000	Enhancers	NHEK	skin
7	chr5:52663800-52665200	Enhancers	NHLF	lung
8	chr5:52663800-52665400	Enhancers	Hela-S3	cervix
9	chr5:52663800-52665800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:52663800-52665800	Enhancers	HMEC	breast
11	chr5:52664000-52664800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:52664200-52665000	Enhancers	HUVEC	blood vessel
13	chr5:52664200-52665000	Enhancers	NH-A	brain
14	chr5:52664400-52665000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:52664400-52665000	Enhancers	Osteobl	bone
16	chr5:52664600-52665200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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