Variant report

Variant	rs11958591
Chromosome Location	chr5:93997250-93997251
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93992680..93994968-chr5:93995971..93998470,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1504921	1.00[AMR][1000 genomes]
rs60486819	1.00[AMR][1000 genomes]
rs6880166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv462254	chr5:93956937-94056825	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv598953	chr5:93956937-94056825	ZNF genes & repeats Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv882386	chr5:93973177-94008969	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93955800-94027600	Weak transcription	NH-A	brain
2	chr5:93969400-94008400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93973800-94004200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:93975600-94012000	Weak transcription	Aorta	Aorta
5	chr5:93976800-94025000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:93981000-94012000	Weak transcription	Left Ventricle	heart
7	chr5:93988600-93997800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:93990600-94008200	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:93991200-94049000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:93992800-93998000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:93994000-93999000	Weak transcription	Osteobl	bone
12	chr5:93994200-93999600	Weak transcription	Adipose Nuclei	Adipose
13	chr5:93994200-93999800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:93994200-94010200	Weak transcription	NHEK	skin
15	chr5:93994200-94012000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:93994200-94030800	Weak transcription	Right Ventricle	heart
17	chr5:93994200-94047200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:93994400-93997600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:93994400-93998600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr5:93994400-94000200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:93994400-94000400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:93994400-94006200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:93994400-94012000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:93994400-94022600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:93994400-94025400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:93994400-94027600	Weak transcription	Liver	Liver
27	chr5:93994400-94027600	Weak transcription	NHDF-Ad	bronchial
28	chr5:93994400-94029000	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:93994400-94048800	Weak transcription	Small Intestine	intestine
30	chr5:93994600-93997800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr5:93994600-93999800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:93994600-94000200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:93994600-94007400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:93994600-94026600	Weak transcription	Fetal Kidney	kidney
35	chr5:93994600-94029200	Weak transcription	Brain Anterior Caudate	brain
36	chr5:93994600-94032200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr5:93995200-93999800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:93995400-93997400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr5:93995400-94012000	Weak transcription	HepG2	liver
40	chr5:93995400-94024800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr5:93995600-93997600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:93995600-93998800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr5:93995600-93999600	Weak transcription	Fetal Lung	lung
44	chr5:93995600-94000000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr5:93995600-94009600	Weak transcription	Fetal Brain Female	brain
46	chr5:93995600-94024400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr5:93995600-94033000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr5:93995600-94050400	Weak transcription	Esophagus	oesophagus
49	chr5:93995800-93997600	Strong transcription	Fetal Intestine Small	intestine
50	chr5:93995800-94000000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links