Variant report

Variant	rs11959564
Chromosome Location	chr5:116495161-116495162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55633492	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56202493	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7722248	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7726724	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752839	chr5:116461101-116504101	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116485600-116497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:116493600-116495400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:116493800-116495200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:116493800-116495600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:116494200-116495400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:116494400-116497400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:116494400-116497600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:116494400-116501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:116494800-116495200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:116494800-116495200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:116494800-116495200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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