Variant report

Variant	rs1195977
Chromosome Location	chr11:64915777-64915778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64912371..64919818-chr11:64945990..64951836,8	MCF-7	breast:
2	chr11:64914527..64916755-chr11:64940789..64942960,2	MCF-7	breast:
3	chr11:64899295..64903630-chr11:64915332..64921315,16	MCF-7	breast:
4	chr11:64912189..64921319-chr11:64935429..64940801,16	K562	blood:
5	chr11:64899644..64904758-chr11:64914742..64920010,11	K562	blood:
6	chr11:64915613..64918344-chr11:64926782..64929403,3	K562	blood:

Variant related genes	Relation type
ENSG00000255200	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000255058	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000254614	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10088	0.87[ASN][1000 genomes]
rs1149569	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1149570	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1195975	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1195976	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1195978	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196047	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1196049	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196051	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1209621	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1211975	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1300836	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546532	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2370165	0.84[ASN][1000 genomes]
rs3819049	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3850948	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3896078	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs491465	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4930699	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs508375	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs527039	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs531178	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7939766	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs907629	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64903600-64917400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:64913600-64917400	Weak transcription	Esophagus	oesophagus
3	chr11:64914200-64918200	Weak transcription	HepG2	liver
4	chr11:64914600-64916400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:64914600-64917400	Weak transcription	Pancreas	Pancrea
6	chr11:64915000-64917200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:64915000-64917400	Weak transcription	Liver	Liver

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