Variant report

Variant	rs11960574
Chromosome Location	chr5:114970905-114970906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:114970519..114971056-chr5:115106117..115106819,2	MCF-7	breast:
2	chr5:114970792..114971474-chr5:115166118..115167014,2	MCF-7	breast:
3	chr5:114970518..114971324-chr5:115403283..115404403,4	K562	blood:
4	chr5:114970139..114971046-chr5:115166737..115167536,2	K562	blood:
5	chr5:114965121..114972183-chr5:115175398..115178697,8	MCF-7	breast:
6	chr5:114970607..114973250-chr5:114975290..114977621,2	K562	blood:
7	chr5:114970097..114971014-chr5:115166622..115167477,4	MCF-7	breast:
8	chr5:114970575..114971098-chr5:115174433..115174988,2	K562	blood:
9	chr5:114969735..114972107-chr5:115165947..115167928,2	MCF-7	breast:
10	chr5:114970470..114971000-chr5:115106287..115106794,2	MCF-7	breast:
11	chr5:114970607..114974645-chr5:114975238..114977621,3	K562	blood:
12	chr5:114969969..114970967-chr5:115174408..115175088,5	MCF-7	breast:
13	chr5:114968611..114971610-chr5:115175867..115178509,3	MCF-7	breast:
14	chr5:114970889..114973875-chr5:114975413..114978406,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177879	Chromatin interaction
ENSG00000251118	Chromatin interaction
ENSG00000145782	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11957723	1.00[EUR][1000 genomes]
rs1366079	1.00[CEU][hapmap]
rs55836657	1.00[EUR][1000 genomes]
rs59687356	1.00[EUR][1000 genomes]
rs60353359	1.00[EUR][1000 genomes]
rs61239464	1.00[EUR][1000 genomes]
rs61268733	1.00[EUR][1000 genomes]
rs73782716	1.00[EUR][1000 genomes]
rs73782718	1.00[EUR][1000 genomes]
rs73782721	1.00[EUR][1000 genomes]
rs73782727	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782728	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3369833	chr5:114969653-114971951	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114962400-114971800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:114970400-114971200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:114970400-114971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:114970400-114972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:114970400-114972200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:114970400-114974000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:114970600-114971200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:114970600-114971400	Enhancers	Dnd41	blood
9	chr5:114970600-114971600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:114970600-114971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:114970600-114971800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:114970600-114972200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:114970600-114972400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:114970600-114972400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:114970600-114972400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:114970600-114973000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:114970600-114973400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:114970600-114973400	Weak transcription	NHDF-Ad	bronchial
19	chr5:114970600-114974400	Weak transcription	Liver	Liver
20	chr5:114970800-114972800	Enhancers	HUES48 Cell Line	embryonic stem cell

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