Variant report

Variant	rs11961020
Chromosome Location	chr6:4503539-4503540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11970306	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1330780	1.00[AMR][1000 genomes]
rs1330781	1.00[AMR][1000 genomes]
rs2149096	1.00[AMR][1000 genomes]
rs6900752	1.00[AMR][1000 genomes]
rs6908375	1.00[AMR][1000 genomes]
rs6924640	1.00[AMR][1000 genomes]
rs6926115	1.00[AMR][1000 genomes]
rs7753397	1.00[AMR][1000 genomes]
rs7775391	1.00[AMR][1000 genomes]
rs9502180	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv970369	chr6:4481968-4554947	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv883414	chr6:4491515-4518250	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4500400-4506600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:4502600-4505400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:4502800-4504000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:4502800-4505200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:4502800-4505400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:4503000-4503600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:4503000-4503800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:4503200-4504000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:4503200-4505200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:4503200-4505800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:4503200-4506600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:4503200-4523200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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