Variant report

Variant	rs11961030
Chromosome Location	chr6:11436564-11436565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
2	chr6:11427951..11430915-chr6:11435068..11437007,2	MCF-7	breast:
3	chr6:11436480..11438117-chr6:11438590..11440961,2	MCF-7	breast:
4	chr6:11434133..11437259-chr6:11439593..11442090,3	MCF-7	breast:
5	chr6:11413490..11417171-chr6:11433636..11437714,3	MCF-7	breast:
6	chr6:11229128..11232149-chr6:11433876..11436826,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16871350	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4711289	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713500	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56150027	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317860	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11961030	C6orf218	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11428000-11438000	Weak transcription	Esophagus	oesophagus
2	chr6:11431000-11439200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11432600-11438000	Weak transcription	Left Ventricle	heart
4	chr6:11434600-11437800	Weak transcription	HUVEC	blood vessel
5	chr6:11434800-11438200	Enhancers	Aorta	Aorta
6	chr6:11435200-11441000	Weak transcription	Fetal Brain Male	brain
7	chr6:11435400-11437800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:11435400-11438000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:11435400-11438200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:11435600-11436600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:11435600-11437800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:11435600-11438000	Weak transcription	Right Atrium	heart
13	chr6:11435600-11438000	Weak transcription	HMEC	breast
14	chr6:11435600-11438000	Weak transcription	NHDF-Ad	bronchial
15	chr6:11435600-11438000	Weak transcription	NHLF	lung
16	chr6:11435600-11438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:11435600-11438200	Weak transcription	HSMMtube	muscle
18	chr6:11435600-11438200	Weak transcription	Osteobl	bone
19	chr6:11435600-11439200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:11435800-11436800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:11435800-11436800	Weak transcription	Placenta	Placenta
22	chr6:11435800-11437600	Enhancers	HepG2	liver
23	chr6:11435800-11437800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:11435800-11438000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:11435800-11438000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:11435800-11438000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:11435800-11438200	Weak transcription	NH-A	brain
28	chr6:11435800-11438400	Weak transcription	Small Intestine	intestine
29	chr6:11436000-11438400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:11436200-11437000	Weak transcription	Pancreas	Pancrea
31	chr6:11436200-11438000	Weak transcription	Adipose Nuclei	Adipose
32	chr6:11436200-11438600	Enhancers	Stomach Mucosa	stomach
33	chr6:11436400-11437400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:11436400-11437800	Weak transcription	Lung	lung
35	chr6:11436400-11438000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:11436400-11438000	Weak transcription	A549	lung

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