Variant report

Variant	rs11961180
Chromosome Location	chr6:132114100-132114101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	esv21004	chr6:132106620-132118530	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv604667	chr6:132106988-132115081	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
10	esv2621656	chr6:132112828-132119747	Enhancers Weak transcription Flanking Active TSS	TF binding region miRNA	1 gene(s)	inside rSNPs	n/a
11	esv3507844	chr6:132113059-132119657	Enhancers Weak transcription Flanking Active TSS	TF binding region miRNA	1 gene(s)	inside rSNPs	n/a
12	esv2503027	chr6:132113387-132118982	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	esv3507843	chr6:132113559-132119532	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv988486	chr6:132113744-132119290	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1972520	chr6:132114040-132118740	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3507845	chr6:132114043-132118821	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3473369	chr6:132114078-132118656	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132112600-132114200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:132112800-132114200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:132112800-132114200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:132112800-132114200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:132113200-132114200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:132113200-132114200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:132113200-132114200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:132113600-132114400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links