Variant report

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182602919..182608806-chr2:182883835..182887841,7	MCF-7	breast:
2	chr2:182815537..182821500-chr2:182882210..182887020,9	MCF-7	breast:
3	chr2:182787404..182790011-chr2:182883297..182885395,2	MCF-7	breast:
4	chr2:182882960..182887260-chr2:182931387..182935614,8	MCF-7	breast:
5	chr2:182882713..182885519-chr2:182907947..182910260,2	K562	blood:
6	chr2:182884072..182887118-chr2:182924056..182928704,4	MCF-7	breast:
7	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
8	chr2:182878350..182883617-chr2:182884641..182888824,4	MCF-7	breast:
9	chr2:182746032..182748076-chr2:182883942..182885472,2	MCF-7	breast:
10	chr2:182862171..182864492-chr2:182883282..182885196,2	MCF-7	breast:
11	chr2:182755546..182763410-chr2:182881457..182887322,14	MCF-7	breast:
12	chr2:182754599..182765670-chr2:182881701..182887661,28	MCF-7	breast:
13	chr2:182884188..182888119-chr2:182990048..182995139,6	MCF-7	breast:
14	chr2:182879005..182882272-chr2:182882883..182886992,5	MCF-7	breast:
15	chr2:182880362..182889935-chr2:182937119..182944893,30	MCF-7	breast:
16	chr2:182788506..182790558-chr2:182882645..182885587,2	MCF-7	breast:
17	chr2:182767750..182771715-chr2:182883912..182886743,3	MCF-7	breast:
18	chr2:182806851..182810464-chr2:182880780..182885268,4	MCF-7	breast:
19	chr2:182798416..182800516-chr2:182884535..182886696,2	MCF-7	breast:
20	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:
21	chr2:182792850..182795214-chr2:182884772..182886542,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1196161	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1196185	0.95[YRI][hapmap]
rs1196188	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13424231	0.83[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[MEX][hapmap]
rs16867516	0.83[ASN][1000 genomes]
rs2701664	0.95[YRI][hapmap]
rs2701665	0.95[YRI][hapmap]
rs2701666	0.80[YRI][hapmap]
rs2701671	0.94[AMR][1000 genomes]
rs3106776	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv834479	chr2:182738483-182905444	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182843400-182904000	Weak transcription	Thymus	Thymus
2	chr2:182880800-182885400	Weak transcription	Stomach Mucosa	stomach
3	chr2:182883000-182886000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:182883000-182886800	Enhancers	Hela-S3	cervix
5	chr2:182883400-182885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:182883400-182885200	Weak transcription	NHEK	skin
7	chr2:182883600-182885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:182883600-182885200	Weak transcription	HMEC	breast
9	chr2:182883600-182885600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:182884000-182886000	Enhancers	Fetal Lung	lung
11	chr2:182884400-182886800	Enhancers	Dnd41	blood
12	chr2:182884600-182886000	Enhancers	NH-A	brain
13	chr2:182884800-182885600	Weak transcription	NHLF	lung
14	chr2:182884800-182886000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:182884800-182888400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:182885000-182885200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:182885000-182886000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:182885000-182886000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:182885000-182886000	Enhancers	Osteobl	bone
20	chr2:182885000-182886200	Enhancers	Fetal Thymus	thymus

Quick Search: