Variant report

Variant	rs11962442
Chromosome Location	chr6:5782730-5782731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17141005	1.00[AMR][1000 genomes]
rs7757016	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518398	chr6:5777546-5787400	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:5765600-5782800	Weak transcription	Gastric	stomach
3	chr6:5765600-5783000	Weak transcription	Esophagus	oesophagus
4	chr6:5766000-5783400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:5766000-5783400	Weak transcription	Right Atrium	heart
6	chr6:5770000-5783000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:5770200-5782800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:5770200-5783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:5772200-5783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:5772400-5782800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:5772600-5782800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:5772800-5786800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:5773800-5783000	Weak transcription	Brain Anterior Caudate	brain
14	chr6:5774400-5787400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:5775600-5783000	Weak transcription	Ovary	ovary
16	chr6:5776200-5783000	Weak transcription	Pancreas	Pancrea
17	chr6:5776400-5786800	Weak transcription	Thymus	Thymus
18	chr6:5777000-5782800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:5779200-5787200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:5779600-5786600	Weak transcription	Primary T cells from cord blood	blood
21	chr6:5781200-5784400	Enhancers	Fetal Muscle Leg	muscle
22	chr6:5781400-5783400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:5781400-5784200	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:5781600-5783400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:5781600-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:5781800-5783000	Weak transcription	Fetal Stomach	stomach
27	chr6:5781800-5783400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:5781800-5783800	Enhancers	Left Ventricle	heart
29	chr6:5781800-5786800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:5782000-5783400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:5782000-5784400	Enhancers	Fetal Intestine Large	intestine
32	chr6:5782200-5783200	Enhancers	Spleen	Spleen
33	chr6:5782200-5784200	Enhancers	Fetal Heart	heart
34	chr6:5782200-5788200	Enhancers	Fetal Thymus	thymus
35	chr6:5782400-5782800	Enhancers	Small Intestine	intestine
36	chr6:5782400-5783000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr6:5782400-5783600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr6:5782400-5783800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:5782400-5783800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:5782400-5784000	Enhancers	Stomach Mucosa	stomach
41	chr6:5782400-5784200	Enhancers	Right Ventricle	heart
42	chr6:5782400-5785000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:5782600-5782800	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr6:5782600-5782800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr6:5782600-5783000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr6:5782600-5783000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:5782600-5783200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr6:5782600-5783200	Enhancers	Primary B cells from peripheral blood	blood
49	chr6:5782600-5783400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:5782600-5783400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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