Variant report

Variant	rs11962782
Chromosome Location	chr6:5700876-5700877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5692733..5695686-chr6:5700140..5701743,2	K562	blood:
2	chr6:5693144..5695686-chr6:5698907..5701640,2	K562	blood:

Variant related genes	Relation type
ENSG00000270174	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11966167	1.00[AMR][1000 genomes]
rs11969845	0.92[AFR][1000 genomes]
rs57077032	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv823407	chr6:5692735-5706712	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5684800-5706000	Weak transcription	Ovary	ovary
6	chr6:5692800-5701400	Weak transcription	Right Atrium	heart
7	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
8	chr6:5696200-5707600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:5696400-5705400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:5699000-5701200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:5699200-5705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:5699400-5708000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:5699400-5713200	Weak transcription	Esophagus	oesophagus
15	chr6:5699600-5704000	Weak transcription	Lung	lung
16	chr6:5699600-5704800	Weak transcription	Dnd41	blood
17	chr6:5699800-5702000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:5699800-5715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:5700000-5701400	Weak transcription	Fetal Thymus	thymus
20	chr6:5700000-5705600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:5700400-5708200	Weak transcription	Primary B cells from cord blood	blood
22	chr6:5700800-5701800	Enhancers	Spleen	Spleen
23	chr6:5700800-5702200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:5700800-5704200	Weak transcription	Primary monocytes fromperipheralblood	blood

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